To handle this the trick was to have a converter which multiplied -1 to the scrollers.
<ScrollViewer Grid.Column="0" Grid.Row="3" x:Name="leftScroller"
ScrollViewer.HorizontalScrollBarVisibility="Auto" ScrollViewer.VerticalScrollBarVisibility="Auto" >
<ContentPresenter Content="{Binding SelectedMarketDataOne}"
ContentTemplateSelector="{StaticResource MarketDataTemplateSelector}">
<ContentPresenter.Style>
<Style TargetType="{x:Type ContentPresenter}">
<Setter Property="RenderTransform">
<Setter.Value>
<TransformGroup>
<TranslateTransform X="{Binding ElementName=rightScroller, Path=HorizontalOffset, Converter={StaticResource MultiplyConverter}, ConverterParameter=-1}" />
<TranslateTransform Y="{Binding ElementName=rightScroller, Path=VerticalOffset, Converter={StaticResource MultiplyConverter}, ConverterParameter=-1}" />
</TransformGroup>
</Setter.Value>
</Setter>
<Style.Triggers>
<DataTrigger Binding="{Binding ElementName=tbLink,Path=IsChecked}" Value="True">
<Setter Property="RenderTransform">
<Setter.Value>
<TransformGroup>
<TranslateTransform X="{Binding ElementName=rightScroller, Path=HorizontalOffset, Converter={StaticResource MultiplyConverter}, ConverterParameter=0}" />
<TranslateTransform Y="{Binding ElementName=rightScroller, Path=VerticalOffset, Converter={StaticResource MultiplyConverter}, ConverterParameter=0}" />
</TransformGroup>
</Setter.Value>
</Setter>
</DataTrigger>
</Style.Triggers>
</Style>
</ContentPresenter.Style>
</ContentPresenter>
</ScrollViewer>
<ScrollViewer Grid.Column="2" Grid.Row="3" x:Name="rightScroller"
ScrollViewer.HorizontalScrollBarVisibility="Auto" ScrollViewer.VerticalScrollBarVisibility="Auto" >
<ContentPresenter Content="{Binding SelectedMarketDataTwo}"
ContentTemplateSelector="{StaticResource MarketDataTemplateSelector}">
<ContentPresenter.Style>
<Style TargetType="{x:Type ContentPresenter}">
<Setter Property="RenderTransform">
<Setter.Value>
<TransformGroup>
<TranslateTransform X="{Binding ElementName=leftScroller, Path=HorizontalOffset, Converter={StaticResource MultiplyConverter}, ConverterParameter=-1}" />
<TranslateTransform Y="{Binding ElementName=leftScroller, Path=VerticalOffset, Converter={StaticResource MultiplyConverter}, ConverterParameter=-1}" />
</TransformGroup>
</Setter.Value>
</Setter>
<Style.Triggers>
<DataTrigger Binding="{Binding ElementName=tbLink,Path=IsChecked}" Value="True">
<Setter Property="RenderTransform">
<Setter.Value>
<TransformGroup>
<TranslateTransform X="{Binding ElementName=leftScroller, Path=HorizontalOffset, Converter={StaticResource MultiplyConverter}, ConverterParameter=0}" />
<TranslateTransform Y="{Binding ElementName=leftScroller, Path=VerticalOffset, Converter={StaticResource MultiplyConverter}, ConverterParameter=0}" />
</TransformGroup>
</Setter.Value>
</Setter>
</DataTrigger>
</Style.Triggers>
</Style>
</ContentPresenter.Style>
</ContentPresenter>
</ScrollViewer>